serif::network::GraphNetwork Member List

This is the complete list of members for serif::network::GraphNetwork, including all inherited members.

calculateAllDerivatives(const std::vector< T > &Y, T T9, T rho) const	serif::network::GraphNetwork	private
calculateReactionRate(const reaclib::REACLIBReaction &reaction, const std::vector< GeneralScalarType > &Y, const GeneralScalarType T9, const GeneralScalarType rho) const	serif::network::GraphNetwork	private
calculateRHS(const std::vector< GeneralScalarType > &Y, const GeneralScalarType T9, const GeneralScalarType rho) const	serif::network::GraphNetwork	private
collectNetworkSpecies()	serif::network::GraphNetwork	private
detectCycles() const	serif::network::GraphNetwork
detectStiff(const NetIn &netIn, double T9, double numSpecies, const boost::numeric::ublas::vector< double > &Y)	serif::network::GraphNetwork	private
evaluate(const NetIn &netIn) override	serif::network::GraphNetwork	virtual
generateJacobianMatrix(const std::vector< double > &Y, const double T9, const double rho)	serif::network::GraphNetwork	private
generateStoichiometryMatrix()	serif::network::GraphNetwork	private
getFormat() const	serif::network::Network
getNetReactionStoichiometry(const reaclib::REACLIBReaction &reaction) const	serif::network::GraphNetwork
getNetworkReactions() const	serif::network::GraphNetwork
getNetworkSpecies() const	serif::network::GraphNetwork
GraphNetwork(const serif::composition::Composition &composition)	serif::network::GraphNetwork	explicit
GraphNetwork(const serif::composition::Composition &composition, const double cullingThreshold, const double T9)	serif::network::GraphNetwork	explicit
involvesSpecies(const serif::atomic::Species &species) const	serif::network::GraphNetwork
isStiff() const	serif::network::Network	inlinevirtual
m_config	serif::network::Network	protected
m_constants	serif::network::Network	protected
m_format	serif::network::Network	protected
m_jacobianMatrix	serif::network::GraphNetwork	private
m_logger	serif::network::Network	protected
m_logManager	serif::network::Network	protected
m_networkSpecies	serif::network::GraphNetwork	private
m_networkSpeciesMap	serif::network::GraphNetwork	private
m_reactionIDMap	serif::network::GraphNetwork	private
m_reactions	serif::network::GraphNetwork	private
m_rhsADFun	serif::network::GraphNetwork	private
m_speciesToIndexMap	serif::network::GraphNetwork	private
m_stiff	serif::network::Network	protected
m_stoichiometryMatrix	serif::network::GraphNetwork	private
Network(const NetworkFormat format=NetworkFormat::APPROX8)	serif::network::Network	explicit
populateReactionIDMap()	serif::network::GraphNetwork	private
populateSpeciesToIndexMap()	serif::network::GraphNetwork	private
recordADTape()	serif::network::GraphNetwork	private
reserveJacobianMatrix()	serif::network::GraphNetwork	private
setFormat(const NetworkFormat format)	serif::network::Network
setStiff(const bool stiff)	serif::network::Network	inlinevirtual
syncInternalMaps()	serif::network::GraphNetwork	private
topologicalSortReactions() const	serif::network::GraphNetwork
validateComposition(const serif::composition::Composition &composition, double culling, double T9)	serif::network::GraphNetwork	private
validateConservation() const	serif::network::GraphNetwork	private
~Network()=default	serif::network::Network	virtual